Working with Aluminum
Working with aluminum is mostly a pain because of jamming. Too much heat, too little heat, not sharp enough all are part of the cutting of alu. You can cut or mill aluminum if you keep it lubed and cool. A-9 cooling agent, or even kerosene can be used to cool so cutting or milling can be accomplished.
Now for cutting squares, drill and jigsaw can work. Make sure the jigsaw blade is of proper teeth per inch and coating with a something to keep it from jamming. The old method is to rub chalk, or soapstone on the blade, that will reduce jamming with particles. This dry method stays away for wet lube which may cause problems with electrical power tools. Just rub chalk or soapstone on the blade, cut for awhile, repeat when neccessary.
Using a Drill press with a two way vise can work but may be a more complicated depending on plate.
There are other home methods.
If you were going to cut alot and I do mean alot. Have the plate water jet cut, fast smooth and is programmed with computer mapping. I would recommend it over CNC because of finish.
rasman