A couple of ideas...
I don't know if any of these would work for you.
I'd try to put the center channel on top of the screen. Maybe you could move the entire assembly forward about six inches, that might give you enough room to fit it on top. Or you could try moving the assembly over a bit, allowing it to fit between the rafters. You could place the center speaker to one side of the rafters (slightly off-center), it may not be perfectly ideal, but with your size screen it may be better than putting it on the floor. Lastly, you could possibly pick a slightly smaller screen size, and maybe move it down an inch or two, then mount the speaker in the top center. I think having the center speaker sticking out a few inches on top would be better than having it on the floor, but I'm no acoustics expert.
A lot of those ideas depend on your speaker dimensions and how perfect you want everything to look. Again, I don't know what your room for play is, or if you even have any. And/or if it is even feasable for you to do. I'd say play with everything and see what you can come up with. If you are going to make changes, its better to do them now before everything is completed.
BTW, it looks like you're going to have a nice little setup in your attic.
Jack