Thanks for the help. So, I'm gonna try the Auto first. Like many people have mentioned, Audyssey will most likely try to say the speakers are large. SVS recommends setting them to small. Do I have the chance to do that step come beore it does the auto calibration? If not, and it calibrates the system and lists the speakers as large and I then change them to small, do I have to recalibrate the system?
No, just apply xover afterwards. It's not Audyssey's fault, it's the receiver manufacturers' implementation to blame. Onkyo for instance will assign large if the F3 is found to be below 80hz. Audyssey has lobbied for such manufacturers to change this, but I guess to no avail.
As for distances, it is extremely accurate; I believe the CTO said it was closer than 0.5" in accuracy, but that the exact figure was confidential.
If you happen to see that the distance is very off from the physical distance of the subwoofer, it is because the sub's filters and/or DSP cause electrical delay. So in fact this Audyssey "distance" measurement is both physical distance + electrical delay combined.
EDIT: Jogging my memory, I think he actually might have said finer than 0.1 ft, and not 0.5".