That appears to definitely be a polarity issue. Make sure your positives are going to positives and negatives going to negatives. Inside your enclosure and out.
Also, you amplifier is rated at peak power. Are your subwoofers 2 ohm, 4 ohm, or dual voice coil? Your amplifier, at 12.5 volts, 4 ohms will do about 175 watts continuous power. At 12.5 volts, 2 ohms you would see around 350 watts continuous power. It is quite common on many car audio amplifiers, to find them rated at peak power. Typically, if you divide the power on the box by 3, that will give you a rough idea of continuous output. Basically what you have is a 700 watt continuous amplifier, whether it being 350 watts x 2 at 2 ohms or 700 watts x 1 at 4 ohms mono (bridged). Let me guess, it has a total fuse value around 60-80 amperes.
A true 2000 watt amplifier would have around a 200-250 ampere fuse, require at least 1/0 ga. power wire, and most likely require an alternator upgrade.