Yes.
There may be slight delta in the amplifier gain between the Emo's and the Onkyo amps, and Audyssey will compensate if necessary by changing the level trims a tick or two. If nothing else has changed (speaker positions, furniture etc.), in theory the trims should be only things that (may) change.
You must really like it LOUD if that 1007 isn't doing it for you!
Best wishes on your retirement!