I think the answer to your question is: Which way does it sound better to you? I used to have a Pioneer 1016 and I was never really happy with the MCACC. Had all Primus speakers too. MCACC was always off on the distances and like yours, set the fronts to large. To me, my old gear sounded better without the auto EQ, but that's just my preference. If nothing else, you can use the auto EQ as a place to start and make adjustments until things sound good to you.