I haven't really gotten down and put my ear there when it rattles, but my previous system had a downward firing subwoofer which caused a bit of the same problem (part of the reason I went with side-firing subwoofers). I'm almost positive by the sound is the floorboards, though.
Unfortunately, cosmetics are an issue so my initial thought was the spikes would raise the bottom of the speakers away from the floorboard at least another half inch and that would maybe give enough breathing room between the actual speaker cabinet (which lies above floorboards that are easily a good 4 feet off of the actual ground). Right now, even with the provided feet, the speaker isn't much more than a quarter inch off the floor at the most, which seems pretty close to the floor for a subwoofer (to me), even a side-firing one.
Am I fooling myself thinking this will make a difference?